PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509243.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 497aa    MW: 53413.1 Da    PI: 8.1808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055577123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_016509243.1 55 FVCEICNKGFQRDQNLQLHRRGH 77
                    89*******************88 PP

2zf-C2H216.72e-05131153123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k +  +s+ k H++t+
  XP_016509243.1 131 FKCERCTKKYAVQSDWKAHMKTC 153
                     89*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-75477No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495577IPR007087Zinc finger, C2H2
PfamPF121717.9E-55577IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035522096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-5119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7126152No hitNo description
SMARTSM0035563131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPDPEAE VIALSPKTLM ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQRTSKE VKKRVYVCPE AMCVHHDPSR ALGDLTGIKK  120
HFCRKHGEKK FKCERCTKKY AVQSDWKAHM KTCGTREYRC DCGTLFSRRD SFITHRAFCD  180
ALAQESARAQ PMGITNTEEN LKVDEAVTSS SSPPPQPLTP STGVLSPVLS IQSSELPADN  240
QNQAGVQLQA AQGTTPVSTT TVTATTISTT ASITGPGSSK VFASVFPPST TLAGHPHSSY  300
SDILCAIGPE QISPIEPMSL SLSSSFYLSA NDGSTLFQDH TGHSQHYGST TQPVLSATAL  360
LQKAAQMGAT SSNNSFLRGL GLAMSSTSAS DNISRVKLEN NVELPGLGIQ LPSNGPSGRW  420
TDLMMGPSHE SMMFGNKPPT LDFLGLGNDA NATSSNGFSA LLSSMDGGFG VATTSYGGVA  480
TRGEAWDGHS DRKPSML
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509243.10.0PREDICTED: protein indeterminate-domain 2-like isoform X2
SwissprotQ9LVQ71e-131IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM1A2F20.0M1A2F2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000131740.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-110indeterminate(ID)-domain 2